_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 1e-07
 Query name: gi|307746900|ref|NP_001182711.1| fep15 selenoprotein precursor [Salmo salar]
 Query range: 1-137  (total 137)

 Target: /data/www-rg/seblastian_results/291955570/tempfiles/temptarget.fasta
 Chromosome: CM007940.1:subseq_40362946,101549_ Strand: +
 Positions:
 -Exon 1  49670        49786
 -Exon 2  50000        50076
 -Exon 3  50574        50652
 -Exon 4  51409        51549

 Redox box: no

Query   MWAFLLLTLAFSATGMT-EEDVTDTAIEERPVIAKGILK <---Intron---> APSVVGUAIKKMPALYMFLMERWALY <---Intron---> HNL
        ||| ||| | |||   | ||/||| |/||| |||||||| <   213bp    >  |||||||||||| |||||||||||| <   497bp    > |||
Target  MWAVLLLMLTFSAPRRTAEENVTDLAVEERLVIAKGILK                GPSVVGUAIKKMPELYMFLMERWALY                HNL
        atggttcacattgcaaagggagagtggggacgagagaca                gcagggtgaaaacgctatcagctgtt                cac
        tgcttttttctcccggccaaatcatctaagtttcagtta                gcgttggctaatcatattttaggcta                aat
        ggctggcggctttaaggaaatcatactagataacgcatg                tatgtaaccgggtgctgtcggagag                tctg
                                                                     *                                      

Query   EYDSGEEKNPRLIFYDDKDEVVQ <---Intron---> TVPVKKMKVDEISSLLDSLGFYKRSQKGEEVPEEFQHFPLRAPRDEL
        |||/|||||| ||||/||||||| <   756bp    > ||||| ||||||||||  |||| |||| ||| |/||/||||||||||
Target  EYDTGEEKNPFLIFYNDKDEVVQ                TVPVKYMKVDEISSLLVLLGFYNRSQKREEVLEQFQYFPLRAPRDEL
        gtgagggaactcattagaggggc                agcgataagggaaaccgtcgttaatcaagggcgctcttcccgcaggc
        aaacgaaaacttttaaaaaatta                ctctaatataatggtttttgtaagcaagaattaataatctgccgaat
        attaggggtatgcccttgtgttg                tctagcgggtgcctgggggtcctatggaggagggtgctcgtccatgg
                                                                                              
 Sequence until next stop: 
TAA
 * 

 Distance CDS-SECIS: 32 ; UGA-SECIS: 308

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = CM007940.1:subseq_40362946,101549_ Strand = + Positions = 51582 - 51672
 Found by:  Infernal (score=23.91) Covels (score=15.76)
 Stem2 length = 9   Apical loop length = 21   Insertion in stem2 = 0, 0
 Free Energy = -17.65

         ..(((((((...........(((((((((((((((...................)))))))))))))))..............)))))))..
 model   uucggucaugcg----UuaAUGAcGgccuggcccuAAAcC----cuuuuuggggcgggccaggcCuGAUGuu-----u-uuucaugaccggc
         ..(((((((...........([[{(({(((((((.....................)))))))}))}]])..........-...)))))))..
 target  UCGUUGCACCCUGUCACACAUGACGAGUGAGGCCCCAAGGCCACAACAUAAUCCAGGCCUCAGUCUGAGGACGACAGAC-UCUGUGCAGUUG
                             ****            ^^                           ****